BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB033B02SP1|AL429680
(842 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig297 878 0.0
>3x_Contig297
Length = 1346
Score = 878 bits (443), Expect = 0.0
Identities = 496/511 (97%), Gaps = 2/511 (0%)
Strand = Plus / Minus
Query: 333 taaatttctgttctctttaattaactgataggcatccctgatttcatttaaagatggatg 392
||||||||||| |||||||||||||||||||| ||||||| | ||||||||| || ||
Sbjct: 1341 taaatttctgtgctctttaattaactgatagggatccctgggtgcatttaaaggggggtg 1282
Query: 393 atcttcatcggactctaaagcctcatatatctcatctacgtcataacccatagtgtttga 452
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 agcttcatcgggctctaaagcctcatatatctcatctacgtcataacccatagtgtttgg 1222
Query: 453 tagcgtttgaactaacgaatcatcgatcagttcgagtggcacggatgggccgccatcttc 512
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 tagcgtttggactaacggatcatcgatcagttcgagtggcacggatgggccgccatcttc 1162
Query: 513 tgttttgctttcagagttttcttgatgggtgctttcagcaggaactaggtagtcgggtaa 572
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1161 tgttttgctttcagagttttcttgatggg-gctttcagcaggaactaggtagtcgggtaa 1103
Query: 573 atcaactttgaaccattcatcctgcatgatttcatgcacggtaattctattaactggatt 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 atcaactttgaaccattcatcctgcatgatttcatgcacggtaattctattaactggatt 1043
Query: 633 gacgatgagcatctttttgattaagctcgcagcaccttgggaaaggaagttaggtatggt 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 gacgatgagcatctttttgattaagctcgcagcaccttgggaaaggaagttaggtatggt 983
Query: 693 gt-aacaccattgctaatgttcttaaacaacactgggatactttcgtcatcgaatggtaa 751
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 gtaaacaccattgctaatgttcttaaacaacactgggatactttcgtcatcgaatggtaa 923
Query: 752 cctacgacacaacatgacgtataagataacccctgaagaccaaacgtcaacctctggacc 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 cctacgacacaacatgacgtataagataacccctgaagaccaaacgtcaacctctggacc 863
Query: 812 tgcatatagtttaccgctgatgacttctggg 842
|||||||||||||||||||||||||||||||
Sbjct: 862 tgcatatagtttaccgctgatgacttctggg 832
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5638
Number of Sequences: 1807
Number of extensions: 5638
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 842
length of database: 10,358,551
effective HSP length: 16
effective length of query: 826
effective length of database: 10,329,639
effective search space: 8532281814
effective search space used: 8532281814
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)